Transcript: lnc-TEX48-1:3

Basic information

LNCipedia transcript ID: lnc-TEX48-1:3 
LNCipedia gene ID: lnc-TEX48-1
Location (hg19): chr9:117428716-117434029
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 550 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000436752; ENST00000436752.1; RP11-402G3.3-001; OTTHUMT00000053783.1
Alternative gene names: ENSG00000230601; RP11-402G3.3; ENSG00000230601.1; OTTHUMG00000020542.1; ENSG00000230601.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.0911 non-coding 
CPAT coding probability 4.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TEX48-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFSF15-1:1
3.1 lnc-TNFSF15-1:1
4.0 lnc-TNFSF15-1:1
4.1 lnc-TNFSF15-1:1
5.0 lnc-TNFSF15-1:1
5.1 lnc-TNFSF8-6:3
5.2 lnc-TEX48-1:3