Transcript: lnc-TEX53-2:3

Basic information

LNCipedia transcript ID: lnc-TEX53-2:3 
LNCipedia gene ID: lnc-TEX53-2
Location (hg19): chr9:117418584-117424654
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 404 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00015872; ENST00000415101; ENST00000415101.1; RP11-402G3.5-002; OTTHUMT00000053786.1; NONHSAT134396
Alternative gene names: XLOC_007832; linc-DFNB31-1; ENSG00000230054; RP11-402G3.5; ENSG00000230054.1; OTTHUMG00000020544.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.2929 non-coding 
CPAT coding probability 7.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TEX53-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFSF15-2:3
3.1 lnc-TNFSF15-2:3
4.0 lnc-TNFSF15-2:3
4.1 lnc-TNFSF15-2:3
5.0 lnc-TNFSF15-2:3
5.1 lnc-TNFSF8-7:3
5.2 lnc-TEX53-2:3