Transcript: lnc-TEX9-5:1

Basic information

LNCipedia transcript ID: lnc-TEX9-5:1 
LNCipedia gene ID: lnc-TEX9-5
Ensembl Gene ID: ENSG00000277245
Ensembl Transcript ID: ENST00000612282
Location (hg19): chr15:56739318-56739895
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 578 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000612282.1
Alternative gene names: ENSG00000277245.1; RP11-48G14.3; AC084782.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -124.2773 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TEX9-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TEX9-5:1
4.1 lnc-TEX9-5:1
5.0 lnc-TEX9-5:1
5.1 lnc-MAP2K1-133:1
5.2 lnc-TEX9-5:1