Transcript: lnc-TFAP4-3:4

Basic information

LNCipedia transcript ID: lnc-TFAP4-3:4 
LNCipedia gene ID: lnc-TFAP4-3
Location (hg19): chr16:4348192-4357588
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9397 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000028551.1|HBMT00000555422.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.9971 non-coding 
CPAT coding probability 7.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TFAP4-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TFAP4-3:4
5.0 lnc-TFAP4-3:4
5.1 lnc-SEPT12-40:6
5.2 lnc-TFAP4-3:4