Transcript: lnc-TFAP4-3:5

Basic information

LNCipedia transcript ID: lnc-TFAP4-3:5 
LNCipedia gene ID: lnc-TFAP4-3
Location (hg19): chr16:4355686-4357588
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1903 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000028551.1|FTMT26200000357.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.3903 non-coding 
CPAT coding probability 11.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TFAP4-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TFAP4-3:5
5.0 lnc-TFAP4-3:5
5.1 lnc-SEPT12-40:7
5.2 lnc-TFAP4-3:5