Transcript: lnc-TFAP4-3:6

Basic information

LNCipedia transcript ID: lnc-TFAP4-3:6 
LNCipedia gene ID: lnc-TFAP4-3
Location (hg19): chr16:4324749-4357588
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 24935 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000028551.1|ENCT00000163226.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.6581 non-coding 
CPAT coding probability 2.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TFAP4-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TFAP4-3:6
5.0 lnc-TFAP4-3:6
5.1 lnc-SEPT12-40:3
5.2 lnc-TFAP4-3:6