Transcript: lnc-TFCP2L1-2:1

Basic information

LNCipedia transcript ID: lnc-TFCP2L1-2:1 
LNCipedia gene ID: lnc-TFCP2L1-2
Ensembl Gene ID: ENSG00000234455
Ensembl Transcript ID: ENST00000441053
Location (hg19): chr2:121839013-121846302
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 812 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003394; ENST00000441053; ENST00000441053.1; AC067960.1-001; OTTHUMT00000332296.1; NONHSAT074023
Alternative gene names: XLOC_002299; linc-SCTR-1; ENSG00000234455; AC067960.1; ENSG00000234455.1; OTTHUMG00000153742.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.7566 non-coding 
CPAT coding probability 5.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TFCP2L1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TFCP2L1-2:1
3.1 lnc-TFCP2L1-2:1
4.0 lnc-TFCP2L1-2:1
4.1 lnc-TFCP2L1-2:1
5.0 lnc-TFCP2L1-2:1
5.1 lnc-SCTR-17:1
5.2 lnc-TFCP2L1-2:1