Transcript: lnc-TFCP2L1-6:1

Basic information

LNCipedia transcript ID: lnc-TFCP2L1-6:1 
LNCipedia gene ID: lnc-TFCP2L1-6
Location (hg19): chr2:121830301-121832969
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2669 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000049837.1|ENCT00000247062.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.371 non-coding 
CPAT coding probability 6.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TFCP2L1-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TFCP2L1-6:1
5.0 lnc-TFCP2L1-6:1
5.1 lnc-SCTR-16:1
5.2 lnc-TFCP2L1-6:1