Transcript: lnc-TFEC-2:5

Basic information

LNCipedia transcript ID: lnc-TFEC-2:5 
LNCipedia gene ID: lnc-TFEC-2
Location (hg19): chr7:115877983-115879305
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 585 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000456289.1; AC073130.3-002; OTTHUMT00000316602.1; NONHSAT122862
Alternative gene names: ENSG00000243243.1; AC073130.3; OTTHUMG00000066049.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.9463 non-coding 
CPAT coding probability 3.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TFEC-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TFEC-2:5
4.0 lnc-TFEC-2:5
4.1 lnc-TFEC-2:5
5.0 lnc-TFEC-2:5
5.1 lnc-TFEC-2:5
5.2 lnc-TFEC-2:5