Transcript: lnc-TFEC-3:1

Basic information

LNCipedia transcript ID: lnc-TFEC-3:1 
LNCipedia gene ID: lnc-TFEC-3
Location (hg19): chr7:115319400-115322672
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1256 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00012923
Alternative gene names: XLOC_006568; linc-PPP1R3A-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.8379 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TFEC-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TFEC-2:1
3.1 lnc-TFEC-3:1
4.0 lnc-TFEC-3:1
4.1 lnc-TFEC-3:1
5.0 lnc-TFEC-3:1
5.1 lnc-TFEC-3:1
5.2 lnc-TFEC-3:1