Transcript: lnc-TGFB3-3:1

Basic information

LNCipedia transcript ID: lnc-TGFB3-3:1 
LNCipedia gene ID: lnc-TGFB3-3
Ensembl Gene ID: ENSG00000258402
Ensembl Transcript ID: ENST00000555465
Location (hg19): chr14:76747286-76776409
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 520 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555465; ENST00000555465.1; RP11-516J2.1-001; OTTHUMT00000414483.1; NONHSAT037910
Alternative gene names: ENSG00000258402; RP11-516J2.1; ENSG00000258402.1; OTTHUMG00000171617.1; AC016526.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.8939 non-coding 
CPAT coding probability 4.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFB3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TGFB3-1:1
3.1 lnc-TGFB3-3:1
4.0 lnc-TGFB3-3:1
4.1 lnc-TGFB3-3:1
5.0 lnc-TGFB3-3:1
5.1 lnc-PROX2-26:1
5.2 lnc-TGFB3-3:1