Transcript: lnc-TGFBRAP1-1:1

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-1:1 
LNCipedia gene ID: lnc-TGFBRAP1-1
Location (hg19): chr2:105950392-105953445
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1853 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004366; NONHSAT072985
Alternative gene names: XLOC_002245; linc-TGFBRAP1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.0837 non-coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TGFBRAP1-1:1
3.1 lnc-TGFBRAP1-1:1
4.0 lnc-TGFBRAP1-1:1
4.1 lnc-TGFBRAP1-1:1
5.0 lnc-TGFBRAP1-1:1
5.1 lnc-AFF3-80:12
5.2 lnc-TGFBRAP1-1:1