Transcript: lnc-TGFBRAP1-1:12

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-1:12 
LNCipedia gene ID: lnc-TGFBRAP1-1
Location (hg19): chr2:105951110-105953950
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1640 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272994.1|FTMT20500052223.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -70.0837 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TGFBRAP1-1:12
5.0 lnc-TGFBRAP1-1:12
5.1 lnc-AFF3-80:6
5.2 lnc-TGFBRAP1-1:12