Transcript: lnc-TGFBRAP1-1:4

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-1:4 
LNCipedia gene ID: lnc-TGFBRAP1-1
Location (hg19): chr2:105950230-105953903
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3674 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT072984
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.0837 non-coding 
CPAT coding probability 3.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFBRAP1-1:4
4.0 lnc-TGFBRAP1-1:4
4.1 lnc-TGFBRAP1-1:4
5.0 lnc-TGFBRAP1-1:4
5.1 lnc-AFF3-80:9
5.2 lnc-TGFBRAP1-1:4