Transcript: lnc-TGFBRAP1-1:6

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-1:6 
LNCipedia gene ID: lnc-TGFBRAP1-1
Location (hg19): chr2:105950466-105953962
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3497 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1701:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -70.0837 non-coding 
CPAT coding probability 3.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TGFBRAP1-1:6
4.1 lnc-TGFBRAP1-1:6
5.0 lnc-TGFBRAP1-1:6
5.1 lnc-AFF3-80:1
5.2 lnc-TGFBRAP1-1:6