Transcript: lnc-TGFBRAP1-2:1

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-2:1 
LNCipedia gene ID: lnc-TGFBRAP1-2
Location (hg19): chr2:105810305-105813861
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1263 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004364; NONHSAT072979
Alternative gene names: XLOC_002244; linc-MFSD9-11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.3775 non-coding 
CPAT coding probability 42.55% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TGFBRAP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TGFBRAP1-2:1
3.1 lnc-TGFBRAP1-2:1
4.0 lnc-TGFBRAP1-2:1
4.1 lnc-TGFBRAP1-2:1
5.0 lnc-TGFBRAP1-2:1
5.1 lnc-AFF3-76:1
5.2 lnc-TGFBRAP1-2:1