Transcript: lnc-TGFBRAP1-3:4

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-3:4 
LNCipedia gene ID: lnc-TGFBRAP1-3
RefSeq ID: NR_110227
Location (hg19): chr2:105713510-105719402
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 573 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110227; NR_110227.1
Alternative gene names: UTAT33


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 344.1259 coding 
CPAT coding probability 16.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TGFBRAP1-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFBRAP1-3:4
4.0 lnc-TGFBRAP1-3:4
4.1 lnc-TGFBRAP1-3:4
5.0 lnc-TGFBRAP1-3:4
5.1 lnc-AFF3-75:3
5.2 lnc-TGFBRAP1-3:4