Transcript: lnc-TGIF1-12:2

Basic information

LNCipedia transcript ID: lnc-TGIF1-12:2 
LNCipedia gene ID: lnc-TGIF1-12
Location (hg19): chr18:4470282-4485710
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 585 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026244; NONHSAT057039
Alternative gene names: XLOC_012613; linc-ARHGAP28-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.0339 non-coding 
CPAT coding probability 9.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGIF1-12:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP001496.1-5:1
3.1 lnc-AP001496.1-12:1
4.0 lnc-AP001496.1-12:1
4.1 lnc-AP001496.1-12:1
5.0 lnc-AP001496.1-12:1
5.1 lnc-RIOK3-262:2
5.2 lnc-TGIF1-12:2