Transcript: lnc-TGIF1-9:1

Basic information

LNCipedia transcript ID: lnc-TGIF1-9:1 
LNCipedia gene ID: lnc-TGIF1-9
Location (hg19): chr18:4254602-4285998
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3218 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: refGeneNc_4670_NR_036489
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.8085 non-coding 
CPAT coding probability 4.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGIF1-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP002478.1-9:1
4.0 lnc-AP002478.1-9:1
4.1 lnc-AP002478.1-9:1
5.0 lnc-AP002478.1-9:1
5.1 lnc-RIOK3-264:1
5.2 lnc-TGIF1-9:1