Transcript: lnc-TGS1-3:2

Basic information

LNCipedia transcript ID: lnc-TGS1-3:2 
LNCipedia gene ID: lnc-TGS1-3
Location (hg19): chr8:56438745-56446511
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 865 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000518261; ENST00000518261.1; RP11-628E19.3-001; OTTHUMT00000378134.1
Alternative gene names: ENSG00000253151; RP11-628E19.3; ENSG00000253151.1; OTTHUMG00000164292.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -515.6669 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGS1-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XKR4-1:1
3.1 lnc-XKR4-1:1
4.0 lnc-XKR4-1:1
4.1 lnc-XKR4-1:1
5.0 lnc-XKR4-1:1
5.1 lnc-SDCBP-55:2
5.2 lnc-TGS1-3:2