Transcript: lnc-THAP12-1:11

Basic information

LNCipedia transcript ID: lnc-THAP12-1:11 
LNCipedia gene ID: lnc-THAP12-1
Ensembl Gene ID: ENSG00000255135
Ensembl Transcript ID: ENST00000530759
Location (hg19): chr11:76152382-76155618
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 599 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530759.1; RP11-111M22.3-001; OTTHUMT00000383285.1; NONHSAT023168
Alternative gene names: ENSG00000255135.2; RP11-111M22.3; OTTHUMG00000165292.2; ENSG00000255135.3; AP002360.2; AP002360.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.6496 non-coding 
CPAT coding probability 5.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THAP12-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRKRIR-1:4
4.0 lnc-PRKRIR-1:4
4.1 lnc-PRKRIR-1:4
5.0 lnc-PRKRIR-1:4
5.1 lnc-WNT11-7:11
5.2 lnc-THAP12-1:11