Transcript: lnc-THAP5-2:9

Basic information

LNCipedia transcript ID: lnc-THAP5-2:9 
LNCipedia gene ID: lnc-THAP5-2
Ensembl Gene ID: ENSG00000234273
Ensembl Transcript ID: ENST00000412410
Location (hg19): chr7:109162038-109237223
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013224; ENST00000412410; ENST00000412410.1; AC073071.1-001; OTTHUMT00000338050.1; NONHSAT122752
Alternative gene names: XLOC_006560; linc-C7orf66-3; ENSG00000234273; AC073071.1; ENSG00000234273.1; OTTHUMG00000155014.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -219.8106 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THAP5-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C7orf66-2:1
3.1 lnc-C7orf66-2:1
4.0 lnc-C7orf66-2:1
4.1 lnc-C7orf66-2:1
5.0 lnc-C7orf66-2:1
5.1 lnc-NRCAM-20:1
5.2 lnc-THAP5-2:9