Transcript: lnc-THAP5-6:1

Basic information

LNCipedia transcript ID: lnc-THAP5-6:1 
LNCipedia gene ID: lnc-THAP5-6
Ensembl Gene ID: ENSG00000230941
Ensembl Transcript ID: ENST00000436714
Location (hg19): chr7:108962377-108966372
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 398 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013223; ENST00000436714; ENST00000436714.1; AC002386.1-001; OTTHUMT00000338048.1; NONHSAT122751
Alternative gene names: XLOC_006559; linc-C7orf66-1; ENSG00000230941; AC002386.1; ENSG00000230941.1; OTTHUMG00000155012.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -236.3811 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THAP5-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C7orf66-1:1
3.1 lnc-C7orf66-1:1
4.0 lnc-C7orf66-1:1
4.1 lnc-C7orf66-1:1
5.0 lnc-C7orf66-1:1
5.1 lnc-NRCAM-16:1
5.2 lnc-THAP5-6:1