Transcript: lnc-THAP6-1:2

Basic information

LNCipedia transcript ID: lnc-THAP6-1:2 
LNCipedia gene ID: lnc-THAP6-1
Ensembl Gene ID: ENSG00000250735
Ensembl Transcript ID: ENST00000515230
Location (hg19): chr4:76326428-76348233
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 777 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007553; ENST00000515230; ENST00000515230.1; RP11-567N4.3-001; OTTHUMT00000366286.1; NONHSAT096921
Alternative gene names: XLOC_003577; linc-THAP6-1; ENSG00000250735; RP11-567N4.3; ENSG00000250735.1; OTTHUMG00000161883.1; ENSG00000250735.5; AC096759.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.9716 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THAP6-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THAP6-1:2
3.1 lnc-THAP6-1:2
4.0 lnc-THAP6-1:2
4.1 lnc-THAP6-1:2
5.0 lnc-THAP6-1:2
5.1 lnc-ART3-14:2
5.2 lnc-THAP6-1:2