Transcript: lnc-THBS2-12:2

Basic information

LNCipedia transcript ID: lnc-THBS2-12:2 
LNCipedia gene ID: lnc-THBS2-12
Ensembl Gene ID: ENSG00000229720
Ensembl Transcript ID: ENST00000419800
Location (hg19): chr6:169434292-169435737
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 934 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011621; ENST00000419800; ENST00000419800.1; RP3-495K2.2-001; OTTHUMT00000043208.1; NONHSAT116175
Alternative gene names: XLOC_005934; linc-DACT2-2; ENSG00000229720; RP3-495K2.2; ENSG00000229720.1; OTTHUMG00000016052.1; AL109924.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.4779 non-coding 
CPAT coding probability 6.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THBS2-12:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THBS2-4:1
3.1 lnc-THBS2-4:1
4.0 lnc-THBS2-4:1
4.1 lnc-THBS2-12:2
5.0 lnc-THBS2-12:2
5.1 lnc-PRKN-78:2
5.2 lnc-THBS2-12:2