Transcript: lnc-THBS2-1:1

Basic information

LNCipedia transcript ID: lnc-THBS2-1:1 
LNCipedia gene ID: lnc-THBS2-1
Ensembl Gene ID: ENSG00000233085
Ensembl Transcript ID: ENST00000435612
Location (hg19): chr6:169686629-169689311
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 479 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011625; ENST00000435612; ENST00000435612.1; XXyac-YX65C7_A.3-001; OTTHUMT00000105436.1; NONHSAT116193
Alternative gene names: XLOC_005937; linc-THBS2-1; ENSG00000233085; XXyac-YX65C7_A.3; ENSG00000233085.1; OTTHUMG00000045406.1; ENSG00000233085.5; BX322234.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.5612 non-coding 
CPAT coding probability 3.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THBS2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THBS2-1:1
3.1 lnc-THBS2-1:1
4.0 lnc-THBS2-1:1
4.1 lnc-THBS2-1:1
5.0 lnc-THBS2-1:1
5.1 lnc-PRKN-82:1
5.2 lnc-THBS2-1:1