Transcript: lnc-THBS2-5:1

Basic information

LNCipedia transcript ID: lnc-THBS2-5:1 
LNCipedia gene ID: lnc-THBS2-5
Ensembl Gene ID: ENSG00000225879
Ensembl Transcript ID: ENST00000444586
Location (hg19): chr6:169362705-169364436
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 914 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011620; ENST00000444586; ENST00000444586.1; RP3-495K2.3-001; OTTHUMT00000043209.1; NONHSAT116168
Alternative gene names: XLOC_005933; linc-DACT2-6; ENSG00000225879; RP3-495K2.3; ENSG00000225879.1; OTTHUMG00000016053.1; AL109924.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.4527 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THBS2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THBS2-5:1
3.1 lnc-THBS2-5:1
4.0 lnc-THBS2-5:1
4.1 lnc-THBS2-5:1
5.0 lnc-THBS2-5:1
5.1 lnc-PRKN-76:7
5.2 lnc-THBS2-5:1