Transcript: lnc-THNSL1-3:1

Basic information

LNCipedia transcript ID: lnc-THNSL1-3:1 
LNCipedia gene ID: lnc-THNSL1-3
Location (hg19): chr10:24536051-24544975
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2195 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000443921.1; PRINS-001; OTTHUMT00000047217.1; NONHSAT011776
Alternative gene names: ENSG00000238115.1; PRINS; OTTHUMG00000017821.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3551 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THNSL1-3:1 yes no no no

Available literature

  1. Glover (2015), Long noncoding RNA profiles of adrenocortical cancer can be used to predict recurrence., Endocr. Relat. Cancer
  2. Shen (2015), Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival., Cancers (Basel)


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-THNSL1-3:1
4.0 lnc-THNSL1-3:1
4.1 lnc-THNSL1-3:1
5.0 lnc-THNSL1-3:1
5.1 lnc-NPY4R2-271:1
5.2 lnc-THNSL1-3:1