Transcript: lnc-THOC3-2:24

Basic information

LNCipedia transcript ID: lnc-THOC3-2:24 
LNCipedia gene ID: lnc-THOC3-2
Location (hg19): chr5:175570453-175575050
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 735 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000513919; ENST00000513919.1; RP11-844P9.2-003; OTTHUMT00000371988.1; NONHSAT105305
Alternative gene names: ENSG00000248596; RP11-844P9.2; ENSG00000248596.1; OTTHUMG00000163191.1; ENSG00000248596.2; ENSG00000248596.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 36.0453 non-coding 
CPAT coding probability 8.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THOC3-2:24 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-826N14.2.1-2:7
3.1 lnc-RP11-826N14.2.1-2:7
4.0 lnc-RP11-826N14.2.1-2:7
4.1 lnc-RP11-826N14.2.1-2:7
5.0 lnc-RP11-826N14.2.1-2:7
5.1 lnc-PDLIM7-50:24
5.2 lnc-THOC3-2:24