Transcript: lnc-THOC3-3:2

Basic information

LNCipedia transcript ID: lnc-THOC3-3:2 
LNCipedia gene ID: lnc-THOC3-3
Ensembl Gene ID: ENSG00000248469
Ensembl Transcript ID: ENST00000512675
Location (hg19): chr5:175476681-175489024
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1516 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512675.1
Alternative gene names: ENSG00000248469.1; RP11-826N14.2; AC139491.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.4858 non-coding 
CPAT coding probability 6.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THOC3-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-826N14.2.1-3:2
4.1 lnc-RP11-826N14.2.1-3:2
5.0 lnc-RP11-826N14.2.1-3:2
5.1 lnc-PDLIM7-52:2
5.2 lnc-THOC3-3:2