Transcript: lnc-TIAL1-1:2

Basic information

LNCipedia transcript ID: lnc-TIAL1-1:2 
LNCipedia gene ID: lnc-TIAL1-1
Location (hg19): chr10:121430236-121431581
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 445 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000433708.1; RP11-179H18.8-002; OTTHUMT00000050678.1; NONHSAT016644
Alternative gene names: ENSG00000224489.1; RP11-179H18.8; OTTHUMG00000019157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.9014 non-coding 
CPAT coding probability 2.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TIAL1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TIAL1-1:2
4.0 lnc-TIAL1-1:2
4.1 lnc-TIAL1-1:2
5.0 lnc-TIAL1-1:2
5.1 lnc-NSMCE4A-41:6
5.2 lnc-TIAL1-1:2