Transcript: lnc-TIMM21-5:5

Basic information

LNCipedia transcript ID: lnc-TIMM21-5:5 
LNCipedia gene ID: lnc-TIMM21-5
Ensembl Gene ID: ENSG00000263958
Ensembl Transcript ID: ENST00000578967
Location (hg19): chr18:70536275-70548632
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 457 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578967.1; RP11-676J15.1-002; OTTHUMT00000444211.1
Alternative gene names: ENSG00000263958.1; RP11-676J15.1; OTTHUMG00000178983.1; AC091138.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.4398 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TIMM21-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TIMM21-5:5
4.0 lnc-TIMM21-5:5
4.1 lnc-TIMM21-5:5
5.0 lnc-TIMM21-5:5
5.1 lnc-KCNG2-72:13
5.2 lnc-TIMM21-5:5