Transcript: lnc-TIMP3-2:1

Basic information

LNCipedia transcript ID: lnc-TIMP3-2:1 
LNCipedia gene ID: lnc-TIMP3-2
Location (hg19): chr22:33048403-33216563
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 6327 bp
Exons: 3
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000514117
Alternative gene names: ENSG00000251658


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.1702 non-coding 
CPAT coding probability 4.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TIMP3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TIMP3-1:1
3.1 lnc-TIMP3-2:1
4.0 lnc-TIMP3-2:1
4.1 lnc-TIMP3-2:1
5.0 lnc-TIMP3-2:1
5.1 lnc-SFI1-25:1
5.2 lnc-TIMP3-2:1