Transcript: lnc-TINCR-6:1

Basic information

LNCipedia transcript ID: lnc-TINCR-6:1 
LNCipedia gene ID: lnc-TINCR-6
Location (hg19): chr19:5482069-5487673
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 300 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027165; NONHSAT060688
Alternative gene names: XLOC_013206; linc-PTPRS-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.1324 non-coding 
CPAT coding probability 3.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TINCR-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SAFB2-2:1
3.1 lnc-SAFB2-2:1
4.0 lnc-SAFB2-2:1
4.1 lnc-SAFB2-2:1
5.0 lnc-SAFB2-2:1
5.1 lnc-TIMM44-75:1
5.2 lnc-TINCR-6:1