Transcript: lnc-TK2-3:1

Basic information

LNCipedia transcript ID: lnc-TK2-3:1 
LNCipedia gene ID: lnc-TK2-3
Location (hg19): chr16:66273432-66300927
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 394 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024703; NONHSAT142995
Alternative gene names: XLOC_011981; linc-CDH11-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.5211 non-coding 
CPAT coding probability 10.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TK2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TK2-1:1
3.1 lnc-TK2-3:1
4.0 lnc-TK2-3:1
4.1 lnc-TK2-3:1
5.0 lnc-TK2-3:1
5.1 lnc-PSMB10-43:6
5.2 lnc-TK2-3:1