Transcript: lnc-TK2-4:3

Basic information

LNCipedia transcript ID: lnc-TK2-4:3 
LNCipedia gene ID: lnc-TK2-4
Location (hg19): chr16:66165578-66167947
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 636 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024702; NONHSAT142993
Alternative gene names: XLOC_011980; linc-CDH11-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.6401 non-coding 
CPAT coding probability 2.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TK2-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TK2-2:1
3.1 lnc-TK2-4:3
4.0 lnc-TK2-4:3
4.1 lnc-TK2-4:3
5.0 lnc-TK2-4:3
5.1 lnc-PSMB10-44:1
5.2 lnc-TK2-4:3