Transcript: lnc-TLK1-1:3

Basic information

LNCipedia transcript ID: lnc-TLK1-1:3 
LNCipedia gene ID: lnc-TLK1-1
Location (hg19): chr2:172138683-172143878
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5196 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000050675.1|ENCT00000250015.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 21.3247 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLK1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TLK1-1:3
5.0 lnc-TLK1-1:3
5.1 lnc-METTL5-13:4
5.2 lnc-TLK1-1:3