Transcript: lnc-TLR10-3:1

Basic information

LNCipedia transcript ID: lnc-TLR10-3:1 
LNCipedia gene ID: lnc-TLR10-3
Location (hg19): chr4:38619886-38621058
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 378 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000515436.2; RP11-617D20.1-006; OTTHUMT00000361346.2; NONHSAT096047
Alternative gene names: ENSG00000231160.3; RP11-617D20.1; OTTHUMG00000160386.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -328.0574 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLR10-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC021860.1-1:1
4.0 lnc-AC021860.1-1:1
4.1 lnc-AC021860.1-1:1
5.0 lnc-AC021860.1-1:1
5.1 lnc-GABRA4-59:1
5.2 lnc-TLR10-3:1