Transcript: lnc-TLR4-1:2

Basic information

LNCipedia transcript ID: lnc-TLR4-1:2 
LNCipedia gene ID: lnc-TLR4-1
Location (hg19): chr9:120410884-120419304
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1298 bp
Exons: 6
Sources: Refseq - Dec 2014
Alternative transcript names: NR_109806
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.6235 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLR4-1:2 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TLR4-1:2
4.0 lnc-TLR4-1:2
4.1 lnc-TLR4-1:2
5.0 lnc-TLR4-1:2
5.1 lnc-B3GNT10-16:2
5.2 lnc-TLR4-1:2