Transcript: lnc-TM9SF2-5:1

Basic information

LNCipedia transcript ID: lnc-TM9SF2-5:1 
LNCipedia gene ID: lnc-TM9SF2-5
RefSeq ID: NR_024013
Location (hg19): chr13:100003674-100004281
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 608 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT034912; NR_024013; NR_024013.1
Alternative gene names: FKSG29


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -208.0908 non-coding 
CPAT coding probability 5.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TM9SF2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TM9SF2-5:1
4.0 lnc-TM9SF2-5:1
4.1 lnc-TM9SF2-5:1
5.0 lnc-TM9SF2-5:1
5.1 lnc-COL4A2-90:1
5.2 lnc-TM9SF2-5:1