Transcript: lnc-TMA16-4:3

Basic information

LNCipedia transcript ID: lnc-TMA16-4:3 
LNCipedia gene ID: lnc-TMA16-4
Location (hg19): chr4:164615246-164717731
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 690 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000070850.1|MICT00000273928.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -158.223 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMA16-4:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C4orf43-4:4
5.0 lnc-C4orf43-4:4
5.1 lnc-TMEM144-35:3
5.2 lnc-TMA16-4:3