Transcript: lnc-TMCO3-2:1

Basic information

LNCipedia transcript ID: lnc-TMCO3-2:1 
LNCipedia gene ID: lnc-TMCO3-2
Location (hg19): chr13:114110944-114116670
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 421 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000422615.1; DCUN1D2-AS1-001; OTTHUMT00000045917.1; NONHSAT035346
Alternative gene names: ENSG00000227608.1; DCUN1D2-AS1; OTTHUMG00000017387.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.6462 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMCO3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMCO3-2:1
4.0 lnc-TMCO3-2:1
4.1 lnc-TMCO3-2:1
5.0 lnc-TMCO3-2:1
5.1 lnc-TMCO3-2:1
5.2 lnc-TMCO3-2:1