Transcript: lnc-TMEM109-4:5

Basic information

LNCipedia transcript ID: lnc-TMEM109-4:5 
LNCipedia gene ID: lnc-TMEM109-4
Location (hg19): chr11:60674251-60678063
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1230 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000257052.1|ENCT00000067162.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.0823 non-coding 
CPAT coding probability 2.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM109-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM109-1:6
5.0 lnc-TMEM109-1:6
5.1 lnc-MS4A18-2:5
5.2 lnc-TMEM109-4:5