Transcript: lnc-TMEM120B-1:3

Basic information

LNCipedia transcript ID: lnc-TMEM120B-1:3 
LNCipedia gene ID: lnc-TMEM120B-1
Location (hg19): chr12:122102031-122134694
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6950 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000010661.1|MICT00000087874.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.1354 non-coding 
CPAT coding probability 6.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM120B-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM120B-1:3
5.0 lnc-TMEM120B-1:3
5.1 lnc-PSMD9-15:2
5.2 lnc-TMEM120B-1:3