Transcript: lnc-TMEM132B-10:3

Basic information

LNCipedia transcript ID: lnc-TMEM132B-10:3 
LNCipedia gene ID: lnc-TMEM132B-10
Ensembl Gene ID: ENSG00000255998
Ensembl Transcript ID: ENST00000544711
Location (hg19): chr12:127175025-127176464
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544711; ENST00000544711.1; RP11-407A16.7-001; OTTHUMT00000399861.1; NONHSAT031801
Alternative gene names: ENSG00000255998; RP11-407A16.7; ENSG00000255998.1; OTTHUMG00000168478.1; AC069235.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.4177 non-coding 
CPAT coding probability 9.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM132B-10:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132B-10:3
3.1 lnc-TMEM132B-10:3
4.0 lnc-TMEM132B-10:3
4.1 lnc-TMEM132B-10:3
5.0 lnc-TMEM132B-10:3
5.1 lnc-RFLNA-31:3
5.2 lnc-TMEM132B-10:3