Transcript: lnc-TMEM132B-4:18

Basic information

LNCipedia transcript ID: lnc-TMEM132B-4:18 
HGNC Gene Symbol: lnc-TMEM132B-4    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2359
Ensembl Gene ID: ENSG00000284848
Ensembl Transcript ID: ENST00000545642
Location (hg19): chr12:126580538-126588481
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 643 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545642; ENST00000545642.1; RP3-446N13.1-001; OTTHUMT00000399913.1; NONHSAT031748
Alternative gene names: ENSG00000256342; RP3-446N13.1; ENSG00000256342.1; OTTHUMG00000168496.1; LINC02359; ENSG00000284848.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.9348 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM132B-4:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132B-3:5
3.1 lnc-TMEM132B-3:5
4.0 lnc-TMEM132B-3:5
4.1 lnc-TMEM132B-3:5
5.0 lnc-TMEM132B-3:5
5.1 lnc-RFLNA-27:7
5.2 lnc-TMEM132B-4:18