Transcript: lnc-TMEM161B-1:2

Basic information

LNCipedia transcript ID: lnc-TMEM161B-1:2 
LNCipedia gene ID: lnc-TMEM161B-1
Location (hg19): chr5:87484995-87485867
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 495 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010981; NONHSAT102600
Alternative gene names: XLOC_004915; linc-CCNH-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.9054 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM161B-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM161B-1:2
3.1 lnc-TMEM161B-1:2
4.0 lnc-TMEM161B-1:2
4.1 lnc-TMEM161B-1:2
5.0 lnc-TMEM161B-1:2
5.1 lnc-ANKRD34B-148:2
5.2 lnc-TMEM161B-1:2