Transcript: lnc-TMEM167A-2:1

Basic information

LNCipedia transcript ID: lnc-TMEM167A-2:1 
LNCipedia gene ID: lnc-TMEM167A-2
Ensembl Gene ID: ENSG00000249857
Ensembl Transcript ID: ENST00000504382
Location (hg19): chr5:82236277-82236802
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 526 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504382; ENST00000504382.1; CTD-2227C6.3-001; OTTHUMT00000370382.1; NONHSAT102501
Alternative gene names: ENSG00000249857; CTD-2227C6.3; ENSG00000249857.1; OTTHUMG00000162780.1; AC027338.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.2886 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM167A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM167A-2:1
3.1 lnc-TMEM167A-2:1
4.0 lnc-TMEM167A-2:1
4.1 lnc-TMEM167A-2:1
5.0 lnc-TMEM167A-2:1
5.1 lnc-ANKRD34B-47:1
5.2 lnc-TMEM167A-2:1