Transcript: lnc-TMEM167A-3:1

Basic information

LNCipedia transcript ID: lnc-TMEM167A-3:1 
LNCipedia gene ID: lnc-TMEM167A-3
Ensembl Gene ID: ENSG00000248112
Ensembl Transcript ID: ENST00000504916
Location (hg19): chr5:82215195-82216938
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 745 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009715; ENST00000504916; ENST00000504916.1; RP11-78C3.1-001; OTTHUMT00000370357.1; NONHSAT102500
Alternative gene names: XLOC_004909; linc-RPS23-1; ENSG00000248112; RP11-78C3.1; ENSG00000248112.1; OTTHUMG00000162767.1; AC108174.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.757 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM167A-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM167A-3:1
3.1 lnc-TMEM167A-3:1
4.0 lnc-TMEM167A-3:1
4.1 lnc-TMEM167A-3:1
5.0 lnc-TMEM167A-3:1
5.1 lnc-ANKRD34B-48:6
5.2 lnc-TMEM167A-3:1