Transcript: lnc-TMEM173-3:6

Basic information

LNCipedia transcript ID: lnc-TMEM173-3:6 
LNCipedia gene ID: lnc-TMEM173-3
Location (hg19): chr5:139023271-139027781
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3573 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000081403.1|MICT00000289921.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -130.9056 non-coding 
CPAT coding probability 12.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM173-3:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM173-3:6
5.0 lnc-TMEM173-3:6
5.1 lnc-DND1-35:4
5.2 lnc-TMEM173-3:6